Software developed by myself, trainees, and/or collaborators:

  • Epiclomal: a complete framework that includes pre-processing, data simulator, different clustering methods, and visualization tools for single-cell DNA methylation

      https://github.com/molonc/Epiclomal

  • aggrmodel: R package to fit aggregated data models 

      https://github.com/gabrielfranco89/aggrmodel

  • RMLPCA: R package to perform maximum likelihood principal component analysis

      available on R CRAN and also at https://github.com/renands/RMLPCA