Assistant Professor
Department of Statistical and Actuarial Sciences
The University of Western Ontario
Software developed by myself, trainees, and/or collaborators:
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CopyMix: Mixture model based single-cell clustering and copy number profiling using variational inference - https://github.com/negar7918/CopyMix
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BayesCPclust: a method that aims to estimate the change points in constant-wise data sequences while simultaneously performing clustering. A Gibbs sampler algorithm was developed to estimate the number of clusters, cluster assignments, number of change points, their positions, and constant levels - https://github.com/acarolcruz/BayesCPclust
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vbaft: an alternative approach to MCMC methods to infer the parameters of the log-logistic AFT model via a mean-field variational Bayes (VB) algorithm. A piecewise approximation technique is embedded in deriving the VB algorithm to achieve conjugacy - https://github.com/chengqianxian/vbaft
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Adaptive Bayesian selection of Basis Functions - https://github.com/phtosEST/Adaptive-Bayesian-Selection-of-Basis-Functions
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Epiclomal: a complete framework that includes pre-processing, data simulator, different clustering methods, and visualization tools for single-cell DNA methylation
https://github.com/molonc/Epiclomal
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aggrmodel: R package to fit functional aggregated data models
https://github.com/gabrielfranco89/aggrmodel
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RMLPCA: R package to perform maximum likelihood principal component analysis
available on R CRAN and also at https://github.com/renands/RMLPCA
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